Conference Publications

  1. “Wear Leveling Revisited,” Taku Onodera and Tetsuo Shibuya. In Proceedings of the 31st International Symposium on Algorithms and Computation, 65:1–65:17, 2020.
  2. “Succinct Oblivious RAM,” Taku Onodera and Tetsuo Shibuya. In Proceedings of the 35th Symposium on Theoretical Aspects of Computer Science, 52:1–52:16, 2018.
  3. “Fast Classification of Protein Structures by an Alignment-free Kernel,” Taku Onodera and Tetsuo Shibuya. In Proceedings of the 23rd International Symposium on String Processing and Information Retrieval, pp. 68–79, 2016.
  4. “Detecting Superbubbles in Assembly Graphs,” Taku Onodera, Kunihiko Sadakane and Tetsuo Shibuya. In Proceedings of the 13th Workshop on Algorithms in Bioinformatics, pp. 338–348, 2013.
  5. “The Gapped Spectrum Kernel for Support Vector Machines,” Taku Onodera and Tetsuo Shibuya. In Proceedings of the 9th International Conference on Machine Learning and Data Mining, pp. 1–15, 2013.
  6. “Succinct de Bruijn Graphs,” Alex Bowe, Taku Onodera, Kunihiko Sadakane and Tetsuo Shibuya. In Proceedings of the 12th Workshop on Algorithms in Bioinformatics, pp. 225–235, 2012.
  7. “An Index Structure for Spaced Seed Search,” Taku Onodera and Tetsuo Shibuya. In Proceedings of the 22nd Annual International Symposium on Algorithms and Computa- tion, pp. 764–772, 2011.

Journal Publications

  1. “A Preferential Attachment Paradox: How Preferential Attachment Combines with Growth to Produce Networks with Log-normal In-degree Distributions,” Paul Sheridan and Taku Onodera. In Scientific Reports, 8(1):2811, 2018.
  2. “Palindromic amplification of the ERBB2 oncogene in primary HER2-positive breast tumors,” Michael Marrota, Taku Onodera, Jeffrey Johnson, Thomas G. Budd, Takaaki Watanabe, Xiaojiang Cui, Armando E. Giuliano, Atushi Niida and Hisashi Tanaka. In Scientific Reports, 7:41921, 2017.

Domestic Presentations

  1. “Wear Leveling: A Theoretical Approach.” Presented at the 5th International Workshop on Innovative Algorithms for Big Data, Kyoto, Japan, October 2019.
  2. “Succinct Oblivious RAM.” Presented at IEICE ISEC, Tokyo, Japan, March 2018. (In Japanese)
  3. “Fast Classification of Protein Structures by an Alignment-free Kernel.” Presented at LA, Nara, Japan, July 2016. (In Japanese)
  4. “Fast Classification of Protein Structures by an Alignment-free Kernel.” Presented at the 2nd International Workshop on Innovative Algorithms for Big Data, Osaka, Japan, October 2016.
  5. “Detecting Superbubbles in Assembly Graphs.” Presented at NII Shonan Meeting on Compact Data Structures for Big Data, Shonan, Japan, September 2013.
  6. “Detecting Superbubbles in Assembly Graphs.” Presented at IPSJ SIGBIO, Sapporo, Japan, September 2013. (In Japanese)
  7. “An Index Structure for Spaced Seed Search.” Presented at IPSJ SIGAL, Yamaguchi, Japan, October 2011. (In Japanese)